3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01983

Details:

PFam ID : PF01983

PFam Domain Description : Guanylyl transferase CofC like

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 150

Average sequence length: 195.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01983	COFC_HALWD_1_89	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01983	A0YCL6_9GAMM_2_243	100

Sequence based PCA Plot of the family - PF01983 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=151 Length=8
Motif2 Start=114 Length=8
Motif3 Start=14 Length=8
Motif4 Start=199 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay