3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01982

Details:

PFam ID : PF01982

PFam Domain Description : Domain of unknown function DUF120

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 104

Average sequence length: 118.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01982	B3TAB4_9ARCH_101_166	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01982	RIFK_THEPD_99_225	100

Sequence based PCA Plot of the family - PF01982 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=4 Length=17
Motif2 Start=55 Length=11
Motif3 Start=26 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay