3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01980 Details: PFam ID : PF01980 PFam Domain Description : Uncharacterised protein family UPF0066 Number of Sequence in 50% Dataset : 54 Number of Sequence in Full Dataset : 669 Average sequence length: 119.4 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01980A1S0M3_THEPD_2_6283.0 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01980B4UY70_9ACTO_16_84100 Sequence based PCA Plot of the family - PF01980 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 3 motifsMotif1 Start=11 Length=20Motif2 Start=53 Length=8Motif3 Start=71 Length=14 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF01980
PFam Domain Description : Uncharacterised protein family UPF0066
Number of Sequence in 50% Dataset : 54
Number of Sequence in Full Dataset : 669
Average sequence length: 119.4
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER