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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01980
Details:

PFam ID : PF01980

PFam Domain Description : Uncharacterised protein family UPF0066

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 669

Average sequence length: 119.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01980A1S0M3_THEPD_2_6283.0
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01980B4UY70_9ACTO_16_84100
Sequence based PCA Plot of the family - PF01980 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=20
Motif2 Start=53 Length=8
Motif3 Start=71 Length=14
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay