3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01979

Details:

PFam ID : PF01979

PFam Domain Description : Amidohydrolase family

Number of Sequence in 50% Dataset : 947

Number of Sequence in Full Dataset : 5669

Average sequence length: 280.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01979	E3CWG4_9BACT_54_361	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01979	Q5A7L5_CANAL_62_525	93.4

Sequence based PCA Plot of the family - PF01979 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=20
Motif2 Start=278 Length=8
Motif3 Start=293 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay