3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01977

Details:

PFam ID : PF01977

PFam Domain Description : 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Number of Sequence in 50% Dataset : 143

Number of Sequence in Full Dataset : 828

Average sequence length: 368.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01977	C7QEQ9_CATAD_1_72	70.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01977	C4XKA4_DESMR_16_451	100

Sequence based PCA Plot of the family - PF01977 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=66 Length=8
Motif4 Start=83 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay