3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01974

Details:

PFam ID : PF01974

PFam Domain Description : tRNA intron endonuclease, catalytic C-terminal domain

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 412

Average sequence length: 85.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01974	Q5DB11_SCHJA_1_59	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01974	B1L6Z5_KORCO_76_161	100

Sequence based PCA Plot of the family - PF01974 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=7 Length=8
Motif2 Start=38 Length=8
Motif3 Start=59 Length=8
Motif4 Start=19 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay