3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01970

Details:

PFam ID : PF01970

PFam Domain Description : Tripartite tricarboxylate transporter TctA family

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 774

Average sequence length: 408.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01970	E7N7Q6_9ACTO_9_208	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01970	C9CTI4_9RHOB_30_471	100

Sequence based PCA Plot of the family - PF01970 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=1 Length=8
Motif3 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay