3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01968

Details:

PFam ID : PF01968

PFam Domain Description : Hydantoinase/oxoprolinase

Number of Sequence in 50% Dataset : 134

Number of Sequence in Full Dataset : 1131

Average sequence length: 281.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01968	E0Y221_9PROT_2_60	80.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01968	D5BP53_PUNMI_189_595	100

Sequence based PCA Plot of the family - PF01968 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=5 Length=27
Motif2 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay