3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01966

Details:

PFam ID : PF01966

PFam Domain Description : HD domain

Number of Sequence in 50% Dataset : 1115

Number of Sequence in Full Dataset : 8519

Average sequence length: 123.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01966	E6N6X2_9ARCH_11_208	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01966	E0RXU1_BUTPB_44_215	99.4

Sequence based PCA Plot of the family - PF01966 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=34 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay