3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01965

Details:

PFam ID : PF01965

PFam Domain Description : DJ-1/PfpI family

Number of Sequence in 50% Dataset : 305

Number of Sequence in Full Dataset : 2909

Average sequence length: 149.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01965	B8DLD3_DESVM_724_800	92.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01965	A8IBP8_CHLRE_58_193	100

Sequence based PCA Plot of the family - PF01965 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=87 Length=8
Motif2 Start=52 Length=11
Motif3 Start=2 Length=8
Motif4 Start=180 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay