3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01964

Details:

PFam ID : PF01964

PFam Domain Description : ThiC family

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 585

Average sequence length: 413.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01964	C9YHK5_CLODR_1_229	38.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01964	B0TGD4_HELMI_4_458	100

Sequence based PCA Plot of the family - PF01964 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=118 Length=11
Motif2 Start=145 Length=8
Motif3 Start=89 Length=11
Motif4 Start=3 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay