3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01963

Details:

PFam ID : PF01963

PFam Domain Description : TraB family

Number of Sequence in 50% Dataset : 311

Number of Sequence in Full Dataset : 715

Average sequence length: 249.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01963	C9LEX7_9BACT_27_346	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01963	Q4ULM7_RICFE_3_132	100

Sequence based PCA Plot of the family - PF01963 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=34 Length=8
Motif3 Start=150 Length=8
Motif4 Start=132 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay