3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01960

Details:

PFam ID : PF01960

PFam Domain Description : ArgJ family

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 954

Average sequence length: 376.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01960	E5X7A0_9ACTN_1_260	81.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01960	E9CE36_9EUKA_12_420	100

Sequence based PCA Plot of the family - PF01960 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=131 Length=8
Motif2 Start=66 Length=8
Motif3 Start=163 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay