3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01959

Details:

PFam ID : PF01959

PFam Domain Description : 3-dehydroquinate synthase (EC 4.6.1.3)

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 140

Average sequence length: 335.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01959	C4RFU4_9ACTO_10_373	65

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01959	C4RFU4_9ACTO_10_373	100

Sequence based PCA Plot of the family - PF01959 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=350 Length=8
Motif2 Start=215 Length=8
Motif3 Start=243 Length=8
Motif4 Start=117 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay