3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01958

Details:

PFam ID : PF01958

PFam Domain Description : Domain of unknown function DUF108

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 178

Average sequence length: 90.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01958	D5NVQ1_CORAM_163_266	30

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01958	F1PTJ6_CANFA_171_258	99.4

Sequence based PCA Plot of the family - PF01958 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=91 Length=11
Motif3 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay