3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01957

Details:

PFam ID : PF01957

PFam Domain Description : NfeD-like C-terminal, partner-binding

Number of Sequence in 50% Dataset : 483

Number of Sequence in Full Dataset : 1333

Average sequence length: 137.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01957	C9P5Y7_VIBME_6_51	88.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01957	A0YK21_LYNSP_2_76	99.9

Sequence based PCA Plot of the family - PF01957 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=18
Motif2 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay