3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01956

Details:

PFam ID : PF01956

PFam Domain Description : Integral membrane protein DUF106

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 270

Average sequence length: 169.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01956	A2D7Z5_TRIVA_7_169	79.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01956	B9PJV3_TOXGO_13_190	100

Sequence based PCA Plot of the family - PF01956 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=140 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay