3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01955

Details:

PFam ID : PF01955

PFam Domain Description : Adenosylcobinamide amidohydrolase

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 192

Average sequence length: 187.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01955	D3RRW9_ALLVD_20_266	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01955	C4RE66_9ACTO_55_160	100

Sequence based PCA Plot of the family - PF01955 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=18
Motif3 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay