3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01951

Details:

PFam ID : PF01951

PFam Domain Description : Archease protein family (MTH1598/TM1083)

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 262

Average sequence length: 135.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01951	A7AN20_BABBO_65_243	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01951	A7AN20_BABBO_65_243	100

Sequence based PCA Plot of the family - PF01951 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=18
Motif2 Start=2 Length=8
Motif3 Start=119 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay