3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01950

Details:

PFam ID : PF01950

PFam Domain Description : Fructose-1,6-bisphosphatase

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 90

Average sequence length: 347.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01950	Q2LW91_SYNAS_1_71	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01950	Q3AD99_CARHZ_2_361	100

Sequence based PCA Plot of the family - PF01950 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=51 Length=8
Motif2 Start=3 Length=8
Motif3 Start=68 Length=11
Motif4 Start=24 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay