3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01948

Details:

PFam ID : PF01948

PFam Domain Description : Aspartate carbamoyltransferase regulatory chain, allosteric domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 269

Average sequence length: 94.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01948	B7ISE1_BACC2_17_167	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01948	F0RTV5_SPHGB_373_475	100

Sequence based PCA Plot of the family - PF01948 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=5 Length=20
Motif2 Start=71 Length=11
Motif3 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay