3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01946

Details:

PFam ID : PF01946

PFam Domain Description : Thi4 family

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 301

Average sequence length: 148.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01946	A5N668_CLOK5_407_460	70.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01946	A3LZT6_PICST_259_319	99

Sequence based PCA Plot of the family - PF01946 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=5 Length=20
Motif3 Start=115 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay