3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01944

Details:

PFam ID : PF01944

PFam Domain Description : Integral membrane protein DUF95

Number of Sequence in 50% Dataset : 219

Number of Sequence in Full Dataset : 522

Average sequence length: 172.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01944	C3AQ55_BACMY_1_85	83.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01944	F2KRQ2_ARCVE_1_107	99.8

Sequence based PCA Plot of the family - PF01944 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=18 Length=17
Motif2 Start=1 Length=8
Motif3 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay