3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01940

Details:

PFam ID : PF01940

PFam Domain Description : Integral membrane protein DUF92

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 337

Average sequence length: 241.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01940	E9DU09_METAQ_1_236	89.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01940	Q5VRD8_ORYSJ_17_99	100

Sequence based PCA Plot of the family - PF01940 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay