3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01938

Details:

PFam ID : PF01938

PFam Domain Description : TRAM domain

Number of Sequence in 50% Dataset : 121

Number of Sequence in Full Dataset : 2458

Average sequence length: 60.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01938	D4G7N9_RIEPU_382_444	40.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01938	B6BWN3_9PROT_379_438	74

Sequence based PCA Plot of the family - PF01938 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=1 Length=14
Motif4 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay