3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01936

Details:

PFam ID : PF01936

PFam Domain Description : NYN domain

Number of Sequence in 50% Dataset : 307

Number of Sequence in Full Dataset : 1158

Average sequence length: 147.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01936	B1SY30_9BURK_2_125	76.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01936	D8SVJ5_SELML_1_81	97.5

Sequence based PCA Plot of the family - PF01936 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=3 Length=17
Motif2 Start=87 Length=8
Motif3 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay