3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01933

Details:

PFam ID : PF01933

PFam Domain Description : Uncharacterised protein family UPF0052

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 832

Average sequence length: 300.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01933	D4EGR2_AGGAC_1_116	77.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01933	C6C1H4_DESAD_8_355	100

Sequence based PCA Plot of the family - PF01933 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=221 Length=8
Motif2 Start=271 Length=8
Motif3 Start=45 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay