3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01930

Details:

PFam ID : PF01930

PFam Domain Description : Domain of unknown function DUF83

Number of Sequence in 50% Dataset : 160

Number of Sequence in Full Dataset : 614

Average sequence length: 163.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01930	D9CG87_9VIRU_23_214	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01930	B9K728_THENN_14_169	100

Sequence based PCA Plot of the family - PF01930 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=13 Length=27
Motif2 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay