3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01928

Details:

PFam ID : PF01928

PFam Domain Description : CYTH domain

Number of Sequence in 50% Dataset : 281

Number of Sequence in Full Dataset : 1214

Average sequence length: 175.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01928	B9DG04_ARATH_1_171	96.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01928	B9DG04_ARATH_1_171	96.0

Sequence based PCA Plot of the family - PF01928 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=25 Length=8
Motif3 Start=60 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay