3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01926

Details:

PFam ID : PF01926

PFam Domain Description : 50S ribosome-binding GTPase

Number of Sequence in 50% Dataset : 684

Number of Sequence in Full Dataset : 12274

Average sequence length: 132.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01926	C3XPZ5_BRAFL_30_246	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01926	A4NZR6_HAEIF_3_78	99.9

Sequence based PCA Plot of the family - PF01926 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=124 Length=8
Motif3 Start=52 Length=8
Motif4 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay