3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01924

Details:

PFam ID : PF01924

PFam Domain Description : Hydrogenase formation hypA family

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 473

Average sequence length: 346.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01924	D9SUL2_CLOC7_1_389	84.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01924	D9SUL2_CLOC7_1_389	100

Sequence based PCA Plot of the family - PF01924 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=30
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay