3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01923

Details:

PFam ID : PF01923

PFam Domain Description : Cobalamin adenosyltransferase

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 839

Average sequence length: 163.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01923	D4T3J3_9XANT_2_102	84.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01923	E9CIV8_9EUKA_10_223	100

Sequence based PCA Plot of the family - PF01923 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=23 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay