3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01921

Details:

PFam ID : PF01921

PFam Domain Description : tRNA synthetases class I (K)

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 245

Average sequence length: 354.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01921	Q74N85_NANEQ_45_422	92.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01921	Q74N85_NANEQ_45_422	100

Sequence based PCA Plot of the family - PF01921 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=169 Length=8
Motif2 Start=67 Length=8
Motif3 Start=92 Length=8
Motif4 Start=26 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay