3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01918

Details:

PFam ID : PF01918

PFam Domain Description : Alba

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 322

Average sequence length: 67.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01918	C5LF34_9ALVE_82_148	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01918	A2GED7_TRIVA_2_66	90.6

Sequence based PCA Plot of the family - PF01918 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay