3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01917

Details:

PFam ID : PF01917

PFam Domain Description : Archaebacterial flagellin

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 253

Average sequence length: 184.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01917	E0SRS0_IGNAA_12_237	73.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01917	E1RJJ9_METP4_4_165	98.4

Sequence based PCA Plot of the family - PF01917 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=11 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay