3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01916

Details:

PFam ID : PF01916

PFam Domain Description : Deoxyhypusine synthase

Number of Sequence in 50% Dataset : 32

Number of Sequence in Full Dataset : 415

Average sequence length: 284.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01916	Q3M2D1_ANAVT_22_86	77.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01916	Q029V5_SOLUE_45_358	100

Sequence based PCA Plot of the family - PF01916 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=287 Length=8
Motif2 Start=268 Length=8
Motif3 Start=158 Length=14
Motif4 Start=218 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay