3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01915

Details:

PFam ID : PF01915

PFam Domain Description : Glycosyl hydrolase family 3 C-terminal domain

Number of Sequence in 50% Dataset : 531

Number of Sequence in Full Dataset : 2499

Average sequence length: 251.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01915	BGLO_EMENI_185_482	73.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01915	B8P5Y8_POSPM_374_469	99.9

Sequence based PCA Plot of the family - PF01915 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=62 Length=8
Motif2 Start=88 Length=8
Motif3 Start=20 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay