3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01914

Details:

PFam ID : PF01914

PFam Domain Description : MarC family integral membrane protein

Number of Sequence in 50% Dataset : 195

Number of Sequence in Full Dataset : 926

Average sequence length: 195.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01914	D1TXU3_YERPE_8_124	91.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01914	B6R883_9RHOB_5_224	100

Sequence based PCA Plot of the family - PF01914 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=198 Length=8
Motif3 Start=89 Length=11
Motif4 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay