3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01913

Details:

PFam ID : PF01913

PFam Domain Description : Formylmethanofuran-tetrahydromethanopterin formyltransferase

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 150

Average sequence length: 132.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01913	Q52UW2_9BACT_2_47	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01913	Q2Y4I0_9ARCH_1_141	100

Sequence based PCA Plot of the family - PF01913 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=4 Length=8
Motif2 Start=88 Length=17
Motif3 Start=119 Length=8
Motif4 Start=58 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay