3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01912

Details:

PFam ID : PF01912

PFam Domain Description : eIF-6 family

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 201

Average sequence length: 188.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01912	Q3LWK6_BIGNA_3_190	72.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01912	IF6_THEPD_5_220	100

Sequence based PCA Plot of the family - PF01912 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=29 Length=8
Motif3 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay