3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01909

Details:

PFam ID : PF01909

PFam Domain Description : Nucleotidyltransferase domain

Number of Sequence in 50% Dataset : 1043

Number of Sequence in Full Dataset : 3944

Average sequence length: 98.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01909	C7Q7B9_CATAD_64_137	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01909	Q16TP7_AEDAE_96_163	99.4

Sequence based PCA Plot of the family - PF01909 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=94 Length=8
Motif3 Start=36 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay