3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01903

Details:

PFam ID : PF01903

PFam Domain Description : CbiX

Number of Sequence in 50% Dataset : 236

Number of Sequence in Full Dataset : 1088

Average sequence length: 104.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01903	D9WC71_9ACTO_142_205	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01903	Q64B06_9ARCH_203_366	100

Sequence based PCA Plot of the family - PF01903 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=65 Length=8
Motif3 Start=54 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay