3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01902

Details:

PFam ID : PF01902

PFam Domain Description : ATP-binding region

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 448

Average sequence length: 202.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01902	C0RZ59_PARBP_155_218	94.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01902	B0EKN7_ENTDI_2_243	100

Sequence based PCA Plot of the family - PF01902 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=55 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay