3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01899

Details:

PFam ID : PF01899

PFam Domain Description : Na+/H+ ion antiporter subunit

Number of Sequence in 50% Dataset : 180

Number of Sequence in Full Dataset : 648

Average sequence length: 146.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01899	B5IWW6_9RHOB_1_46	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01899	A2SS12_METLZ_10_178	100

Sequence based PCA Plot of the family - PF01899 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay