3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01896

Details:

PFam ID : PF01896

PFam Domain Description : Eukaryotic and archaeal DNA primase small subunit

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 652

Average sequence length: 165.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01896	C6TIN5_SOYBN_119_239	88.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01896	A0LHZ3_SYNFM_243_345	95.3

Sequence based PCA Plot of the family - PF01896 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=241 Length=20
Motif2 Start=1 Length=8
Motif3 Start=52 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay