3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01894

Details:

PFam ID : PF01894

PFam Domain Description : Uncharacterised protein family UPF0047

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 1001

Average sequence length: 117.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01894	D6UP66_9BACT_1_34	56.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01894	B7G8P7_PHATC_82_241	100

Sequence based PCA Plot of the family - PF01894 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=137 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay