3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01893

Details:

PFam ID : PF01893

PFam Domain Description : Uncharacterised protein family UPF0058

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 76

Average sequence length: 84.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01893	E4NNA4_HALBP_1_91	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01893	E4NNA4_HALBP_1_91	100

Sequence based PCA Plot of the family - PF01893 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=18
Motif2 Start=41 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay