3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01891

Details:

PFam ID : PF01891

PFam Domain Description : Cobalt uptake substrate-specific transmembrane region

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 680

Average sequence length: 201.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01891	Q8YI05_BRUME_3_94	71.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01891	B1GYP3_UNCTG_2_226	100

Sequence based PCA Plot of the family - PF01891 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay