3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01889

Details:

PFam ID : PF01889

PFam Domain Description : Membrane protein of unknown function DUF63

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 81

Average sequence length: 265.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01889	E7QQK5_9EURY_81_377	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01889	Q2FLY7_METHJ_1_281	100

Sequence based PCA Plot of the family - PF01889 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=212 Length=8
Motif3 Start=83 Length=8
Motif4 Start=282 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay