3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01888

Details:

PFam ID : PF01888

PFam Domain Description : CbiD

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 447

Average sequence length: 248.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01888	D7GX16_9FIRM_136_286	61.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01888	E5Y4Q2_BILWA_5_276	100

Sequence based PCA Plot of the family - PF01888 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=20
Motif2 Start=94 Length=8
Motif3 Start=62 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay